Wed 2020-Nov-18

On COVID vaccine protection persistence

Tagged: COVID / JournalClub / MathInTheNews / Statistics

Everybody’s worried about how long the protection from a COVID vaccine will last, whether there can be reinfections, and so on. How much do we actually know about that as of now?

Unsurprisingly, very little. Really the only way to know is to vaccinate a bunch of people and watch them for a couple of years. The animal data looked pretty good before the clinical trials, but it always looks good or the human trials wouldn’t have been allowed to start.

Over at In the Pipeline, Derek Lowe wrote about this [reference 1] (among other things like side-effects, efficacy across different populations, logistics of the rollout, and other really interesting stuff).

That leads to the paper by Dan, et al. [reference 2] which hit the preprint server (“not yet peer reviewed”) in the last couple days. Lowe notes that this seems to be the largest and most detailed study of post-viral-infection immunity in the entire medical literature! It basically says that at 6 months post-infection:

  • spike antibodies were still abundant,
  • the spike-specific B cells that form immune memory were still abundant,
  • the CD4+ and CD8+ T cells that do the actual work were slowly decaying with a half life of about 3-5 months, as one would expect of an immune system slowly standing down after an infection.

That’s the good news.

Dan, et al. on SARS-COV-2 spike antibodies over time The other, more frustrating news that I get from that paper is the intense variability across patients and across time, as shown in their Figure 1, excerpted here. There are going to be a lot of different kinds of response seen in the population, possibly including re-infection. People will probably get really confused & angry about it. (Though, to be fair, “confused & angry” does seems to be the zeitgeist.)

Bottom line

Overall, this is looking like good, solid vaccine response with persistence of the things we think matter for a long time. Lowe reminds us of the following hopeful historical fact:

For what it’s worth, there are patients who survived the 1918 influenza pandemic who had B cells that still responded [reference 3] with fresh neutralizing antibodies after over 90 years, so they can be rather hardy.

So… yeah, 90 years. I’ll take that. Let’s hope we can all get that.

Added 2020-Dec-07:

NEJM letter on mRNA-1237 persistence mRNA-1273 persistence results On 2020-Dec-03 the New England Journal of Medicine published a letter from the mRNA-1273 Study Group (basically the cohort of academic & Moderna scientists studying the Moderna vacccine). [reference 4]

The figure at right reproduces their results, saying that reactions to the virus remain quite stable are 119 days (about 4 months) from the first injection. Ok, that’s not a long time, but it’s the time that has elapsed so we can look empirically.

Emphatically: this is not a prediction, it is a measurement of what actually happened. Here we’re looking at 34 trial participants from the Phase I trial, who have been on the study the longest: 15 subjects age 18-55, 9 subjects age 56-70, and 10 subjects age 71 and older. Notably, the curves shown here do not stratify by age, indicating that vaccine response is probably as strong in the elderly as in everybody else. The 3 columns show the 3 age cohorts, youngest to oldest. The arrows on the horizontal axes show the first and second injection dates.

  • Row A shows the binding to the receptor binding domain of the coronavirus spike protein; higher means the antibodies are recognizing and binding to the Big Bad. Note that levels are generally high and stable.
  • Row B shows the inhibitory dilution that neutralizes 50% in a pseudovirus assay (ID50). This declines a bit, but apparently so does the same assay in convalescent patients, so we’re at least looking like convalescent patients?
  • Row C shows something similar but with a different assay.
  • Row D shows a plaque-reduction neutralization assay, which is again somethingn along the same lines, but testing in a different system in a different way.

The authors point out that all these responses were above the median of 41 control subjects, who were convalescing from having actually had COVID-19. So the vaccine response is stronger than having had the disease, which is good to see.

While the antibodies do seem to be slowly declining, they’re declining at about the rate of convalescent patients. As the authors point out, it is not yet known if memory B-cell response has been achieved, i.e., if the immune system will have a long-term memory of SARS-COV-2. It did, however, provoke primary CD4 type 1 T helper cell responses 43 days after the first vaccination (which is hopeful), and B-cell studies are ongoing.

So it looks like the dose used in the Phase 3 trials, the same as the one studied here, is the right one, or at least a good one.

Notes & References

1: D Lowe, “Vaccine Possibilities”, In the Pipeline, 2020-Nov-18.

2: J Dan, et al., “Immunological memory to SARS-CoV-2 assessed for greater than six months after infection”, biorxiv DOI 10.1101/2020.11.15.383323. NB: This is a preprint, not yet peer-reviewed for scientific publication.

3: X Yu, “Neutralizing antibodies derived from the B cells of 1918 influenza pandemic survivors”, Nature 2008-Sep-25, 455(7212): 532-536.

4: mRNA-1273 Study Group, “Durability of Responses after SARS-CoV-2 2020mRNA-1273 Vaccination”, NEJM DOI: 10.1056/NEJMc2032195, 2020-Dec-03.

Published Wed 2020-Nov-18

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