* Israeli COVID-19 VE Stratified by Age on Thu Sep 02 00:59:22 2021
- input data directory: .
- results directory: .
- transcript to: ./2021-08-29-covid-simpson-ve-confidence-intervals-by-age.txt
Loading Data:
-------------
* Loading data from ./2021-08-29-covid-simpson-Israeli_data_August_15_2021-vax-summary.tsv
- Found this dataframe:
Age.Cohort Unvax.Popln Vax.Popln Part.Vax.Popln Unvax.Severe Vax.Severe
1 12-15 383649 184549 49986 1 0
2 16-19 127745 429109 26662 2 0
3 20-29 265871 991408 43065 4 0
4 30-39 194213 968837 33912 12 2
5 40-49 145355 927214 26025 24 9
6 50-59 84545 747949 17472 34 22
7 60-69 65205 665717 10668 50 58
8 70-79 20512 464336 5886 39 92
9 80-89 12683 208911 3924 32 100
10 90+ 3132 46602 1764 16 18
Part.Vax.Severe
1 0
2 0
3 0
4 0
5 1
6 0
7 3
8 2
9 2
10 2
Computing efficacies and confidence interval:
---------------------------------------------
* Adding vaccine efficacies and 95% confidence limits
Age.Cohort Unvax.Popln Vax.Popln Part.Vax.Popln Unvax.Severe Vax.Severe
1 12-15 383649 184549 49986 1 0
2 16-19 127745 429109 26662 2 0
3 20-29 265871 991408 43065 4 0
4 30-39 194213 968837 33912 12 2
5 40-49 145355 927214 26025 24 9
6 50-59 84545 747949 17472 34 22
7 60-69 65205 665717 10668 50 58
8 70-79 20512 464336 5886 39 92
9 80-89 12683 208911 3924 32 100
10 90+ 3132 46602 1764 16 18
Part.Vax.Severe VE VE.LCL VE.UCL PVE PVE.LCL
1 0 100.00000 -698.57492 100.00000 100.00000 -2848.36586
2 0 100.00000 42.82053 100.00000 100.00000 -820.23013
3 0 100.00000 74.24524 100.00000 100.00000 -492.87459
4 0 96.65900 86.66895 99.16268 100.00000 -83.31925
5 1 94.12130 87.57402 97.21885 76.72831 -35.65621
6 0 92.68592 87.57350 95.69489 100.00000 45.33915
7 3 88.63815 83.45297 92.19830 63.32677 -10.96625
8 2 89.57925 84.88099 92.81663 82.12882 32.97761
9 2 81.02811 71.83322 87.21869 79.79899 23.79699
10 2 92.43917 85.36194 96.09266 77.80612 13.51370
PVE.UCL
1 100.00000
2 100.00000
3 100.00000
4 100.00000
5 96.00826
6 100.00000
7 87.88355
8 95.23733
9 94.64922
10 94.31314
Making plot:
------------
* Plotted to ./2021-08-29-covid-simpson-ve-confidence-intervals-by-age.png
* Israeli COVID-19 VE Stratified by Age completed Thu Sep 02 00:59:24 2021 (1.4 sec elapsed).